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I have also added some of my base rock pieces that where in the sump to the tank to help combat any ammonia spike
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Yes that's a good idea I have done that in the past when treating my Regal Tang with Hyposalinity, the only problem is you'll wipe out all the fauna but it'll be reseeded when placed back in the tank so no big deal. Also forgot to ask, are you using a refractometer to measure salinity ?